OVERVIEW ON GUT MICROBIOME
DOI:
https://doi.org/10.22159/ijms.2025v13i3.54218Keywords:
gastrointestinal, gut microbiota, metabolics, microbiome, hostAbstract
The assemblage of eukaryotic and prokaryotic kingdom inhabiting the gastrointestinal system is termed as the microbiota and developed alongside human and other eukaryotic systems for millennia, developing a mutually complicated and advantageous connection. The digestive system is home to an estimated number of microorganisms surpassing 1014, which is approximately greater then than the plethora of human cells and more than hundredfold times greater than the amount of genetic information found in the human gene. The microbiome is the native population of microbes (microbiota) in the host and develops along with it. The perception that the microbes predominantly present in human system gives vital environmental functions that act as a welfare for the whole microbial host system, therefore the mass fundamental development. The human gut microbiome is composed of variants of number of bacteria. Particularly, this gut environment depicts tons of bacterial cells which are important factors that manage gut immune system. The metabolic activities such as immunity, nutrition absorption, and digestion are interlinked with this microbial community. Studies developed that abnormalities in the gut microbiome are result of diseases including obesity, inflammatory lung disease, and CVS diseases, carcinoma during advent studies. The assemblage of bacteria, Archaea, and eukarya inhabiting the gastrointestinal tract is known as the microbiota and developed alongside the host for millennia, establishing a mutually complex and advantageous relationship. This review focuses on the overall view of the microbe in gut.
References
Derrien M, Mikulic N, Uyoga MA, Chenoll E, Climent E, Howard- Varona A, et al. Gut microbiome function and composition in infants from rural Kenya and association with human milk oligosaccharides. Gut Microbes 2023;15:2178793.
Brushett S, Gacesa R, Vich Vila A, Brandao Gois MF, Andreu- Sánchez S, Swarte JC, et al. Gut feelings: The relations between depression, anxiety, psychotropic drugs and the gut microbiome. Gut Microbes 2023;15:2281360.
De la Cuesta-Zuluaga J, Huus KE, Youngblut ND, Escobar JS, Ley RE. Obesity is the main driver of altered gut microbiome functions in the metabolically unhealthy. Gut Microbes 2023;15:2246634.
Jiang F, Cai M, Peng Y, Li S, Liang B, Ni H, et al. Changes in the gut microbiome of patients with type a aortic dissection. Front Microbiol 2023;14:1092360.
Anand S, Mande SS. Diet, microbiota and gut-lung connection. Front Microbiol 2018;9:2147.
Chassaing B, Compher C, Bonhomme B, Liu Q, Tian Y, Walters W, et al. Randomized controlled-feeding study of dietary emulsifier carboxymethylcellulose reveals detrimental impacts on the gut microbiota and metabolome. Gastroenterology 2022;162:743-56.
Le Roy T, Debédat J, Marquet F, Da-Cunha C, Ichou F, Guerre-Millo M, et al. Comparative evaluation of microbiota engraftment following fecal microbiota transfer in mice models: Age, kinetic and microbial status matter. Front Microbiol 2018;9:3289.
Becker HE, Demers K, Derijks LJ, Jonkers DM, Penders J. Current evidence and clinical relevance of drug-microbiota interactions in inflammatory bowel disease. Front Microbiol 2023;14:1107976.
Carson MD, Westwater C, Novince CM. Adolescence and the microbiome: Implications for healthy growth and maturation. Am J Pathol 2023;193:1900-9.
McCoy R, Oldroyd S, Yang W, Wang K, Hoven D, Bulmer D, et al. In vitro models for investigating intestinal host-pathogen interactions. Adv Sci (Weinh) 2024;11:e2306727.
Zhang M, Sun K, Wu Y, Yang Y, Tso P, Wu Z. Interactions between intestinal microbiota and host immune response in inflammatory bowel disease. Front Immunol 2017;8:942.
Stanislawski MA, Frank DN, Borengasser SJ, Ostendorf DM, Ir D, Jambal P, et al. The gut microbiota during a behavioral weight loss intervention. Nutrients 2021;13:3248.
Li J, Ghosh TS, McCann R, Mallon P, Hill C, Draper L, et al. Robust cross-cohort gut microbiome associations with COVID-19 severity. Gut Microbes 2023;15:2242615.
Louca P, Nogal A, Wells PM, Asnicar F, Wolf J, Steves CJ, et al. Gut microbiome diversity and composition is associated with hypertension in women. J Hypertens 2021;39:1810-6.
Mokkala K, Houttu N, Koivuniemi E, Sørensen N, Nielsen HB, Laitinen K. GlycA, a novel marker for low grade inflammation, reflects gut microbiome diversity and is more accurate than high sensitive CRP in reflecting metabolomic profile. Metabolomics 2020;16:76.
Pallister T, Jackson MA, Martin TC, Zierer J, Jennings A, Mohney RP, et al. Hippurate as a metabolomic marker of gut microbiome diversity: Modulation by diet and relationship to metabolic syndrome. Sci Rep 2017;7:13670.
Smith RP, Easson C, Lyle SM, Kapoor R, Donnelly CP, Davidson EJ, et al. Gut microbiome diversity is associated with sleep physiology in humans. PLoS One 2019;14:e0222394.
Youngblut ND, Reischer GH, Walters W, Schuster N, Walzer C, Stalder G, et al. Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades. Nat Commun 2019;10:2200.
Chen X, D’Souza R, Hong ST. The role of gut microbiota in the gut-brain axis: Current challenges and perspectives. Protein Cell 2013;4:403-14.
Dang AT, Marsland BJ. Microbes, metabolites, and the gut-lung axis. Mucosal Immunol 2019;12:843-50.
Jiang Q, Xie C, Chen L, Xiao H, Xie Z, Zhu X, et al. Identification of gut microbes associated with feed efficiency by daily-phase feeding strategy in growing-finishing pigs. Anim Nutr 2023;12:42-53.
Liu X, Zhang G, Li S, Liu Y, Ma K, Wang L. Identification of gut microbes-related molecular subtypes and their biomarkers in colorectal cancer. Aging (Albany NY) 2024;16:2249-72.
Zhang J, Feng Y, Hu Y. Integration of SNP genotyping and 16S rRNA amplicon sequencing to identify heritable gut microbes in chickens. STAR Protoc 2023;4:102071.
Park H, Joachimiak MP, Jungbluth SP, Yang Z, Riehl WJ, Canon RS, et al. A bacterial sensor taxonomy across earth ecosystems for machine learning applications. mSystems 2024;9:e0002623.
Xu C, Jiang H, Feng LJ, Jiang MZ, Wang YL, Liu SJ. Christensenella minuta interacts with multiple gut bacteria. Front Microbiol 2024;15:1301073.
Yin PK, Xiao H, Yang ZB, Yang DS, Yang YH. Shotgun metagenomics reveals the gut microbial diversity and functions in Vespa mandarinia (Hymenoptera: Vespidae) at multiple life stages. Front Microbiol 2024;15:1288051.
Luoto R, Pärtty A, Vogt JK, Rautava S, Isolauri E. Reversible aberrancies in gut microbiome of moderate and late preterm infants: Results from a randomized, controlled trial. Gut Microbes 2023;15:2283913.
Melis C, Billing AM, Wold PA, Ludington WB. Gut microbiome dysbiosis is associated with host genetics in the Norwegian Lundehund. Front Microbiol 2023;14:1209158.
Peters BA, Qi Q, Usyk M, Daviglus ML, Cai J, Franceschini N, et al. Association of the gut microbiome with kidney function and damage in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL). Gut Microbes 2023;15:2186685.
Silbergleit M, Vasquez AA, Miller CJ, Sun J, Kato I. Oral and intestinal bacterial exotoxins: Potential linked to carcinogenesis. Prog Mol Biol Transl Sci 2020;171:131-93.
Poveshchenko AF, Cherkas VN, Kabakov AV, Kazakov OV. Gut
microbiota and carcinogenesis: Actual aspects. Zh Mikrobiol Epidemiol Immunobiol 2023;100:247-60.
Mitesh KD, Alwarappan S, Sanjay T. Probiotics in Anticancer Immunity. United Arab Emirates: Bentham Science Publishers; 2023.
Samuels AN, Roggiani M, Smith KA, Zhu J, Goulian M, Kohli RM. Deciphering the role of colicins during colonization of the mammalian gut by commensal E. coli. Microorganisms 2020;8:664.
Frydrych ZL, Chwarścianek N, Błaszak K, Czajkowski R. The potential role of Helicobacter pylori and other gut dysbiosis factors in the development of rosacea. Forum Dermatologicum 2023;9:138-42.
Theilmann MC, Goh YJ, Nielsen KF, Klaenhammer TR, Barrangou R, Abou Hachem M. Lactobacillus acidophilus metabolizes dietary plant glucosides and externalizes their bioactive phytochemicals. mBio 2017;8:e01421-17.
Musumeci S, Coen M, Leidi A, Schrenzel J. The human gut mycobiome and the specific role of Candida albicans: Where do we stand, as clinicians? Clin Microbiol Infect 2022;28:58-63.
Vizioli C, Jaime-Lara R, Daniel SG, Franks A, Diallo AF, Bittinger K, et al. Administration of Bifidobacterium animalis subsp. lactis strain BB-12(®) in healthy children: Characterization, functional composition, and metabolism of the gut microbiome. Front Microbiol 2023;14:1165771.
Jaén-Luchoro D, Gonzales-Siles L, Karlsson R, Svensson- Stadler L, Molin K, Cardew S, et al. Corynebacterium sanguinis sp. nov., a clinical and environmental associated corynebacterium. Syst Appl Microbiol 2020;43:126039.
Uzal FA, Navarro MA, Asin J, Boix O, Ballarà-Rodriguez I, Gibert X. Clostridial diarrheas in piglets: A review. Vet Microbiol 2023;280:109691.
Published
How to Cite
Issue
Section
Copyright (c) 2025 HARINI P, DINESH S, RADHA PALANISWAMY

This work is licensed under a Creative Commons Attribution 4.0 International License.